Index

_

__init__() (physDBD.data_desc.DataDesc method) (physDBD.diff_tvr.DiffTVR method) (physDBD.gauss.dparams0_traj.DParams0GaussTraj method)

A

array_safe_eq() (in module physDBD.helpers)

C

convert_np_to_pd() (in module physDBD.helpers)

convert_to_pd() (physDBD.gauss.dparams0_traj.DParams0GaussTraj method) create_fnames() (physDBD.import_helper.ImportHelper static method)

D

DataDesc (class in physDBD.data_desc) dc_eq() (in module physDBD.helpers)

DiffTVR (class in physDBD.diff_tvr) DParams0GaussTraj (class in physDBD.gauss.dparams0_traj)

E

export() (physDBD.gauss.dparams0_traj.DParams0GaussTraj method)

F

fromFile() (physDBD.gauss.dparams0_traj.DParams0GaussTraj class method)

G

get_deriv_tvr() (physDBD.diff_tvr.DiffTVR method) get_deriv_tvr_update() (physDBD.diff_tvr.DiffTVR method)

get_tf_outputs() (physDBD.gauss.dparams0_traj.DParams0GaussTraj method) get_tf_outputs_normalized() (physDBD.gauss.dparams0_traj.DParams0GaussTraj method)

I

import_gillespie_ssa_at_time() (physDBD.import_helper.ImportHelper static method) import_gillespie_ssa_from_data_desc() (physDBD.import_helper.ImportHelper static method)

import_gillespie_ssa_from_data_desc_at_time() (physDBD.import_helper.ImportHelper static method) import_gillespie_ssa_whole_file() (physDBD.import_helper.ImportHelper static method) ImportHelper (class in physDBD.import_helper)

M

make_en_mat() (physDBD.diff_tvr.DiffTVR method) make_gn_vec() (physDBD.diff_tvr.DiffTVR method) make_hn_mat() (physDBD.diff_tvr.DiffTVR method) make_ln_mat() (physDBD.diff_tvr.DiffTVR method) module physDBD physDBD.data_desc physDBD.diff_tvr physDBD.gauss.dparams0_traj physDBD.helpers physDBD.import_helper

N

no_seeds (physDBD.data_desc.DataDesc attribute) no_times (physDBD.data_desc.DataDesc attribute)

normalize() (in module physDBD.helpers) nt (physDBD.gauss.dparams0_traj.DParams0GaussTraj property) nv (physDBD.gauss.dparams0_traj.DParams0GaussTraj property)

P

physDBD module physDBD.data_desc module physDBD.diff_tvr module

physDBD.gauss.dparams0_traj module physDBD.helpers module physDBD.import_helper module

S

species (physDBD.data_desc.DataDesc attribute)

T

time_end (physDBD.data_desc.DataDesc attribute) time_interval (physDBD.data_desc.DataDesc attribute)

time_start (physDBD.data_desc.DataDesc attribute) times (physDBD.data_desc.DataDesc attribute)