C++ documentation with Doxygen/CMake/Sphinx/Breathe for those of use who are totally lost — Part 2
C++ documentation with Doxygen/CMake/Sphinx/Breathe for those of us who are totally lost — Part 2
Part 2 of the series where I’m the fool discovering how docs work.

You can find the complete code here.
The end result of this 3 part series will be documentation for C++
library in the ReadTheDocs
theme hosted on GitHub
. The final website is here.
1. First part. Getting some warnings about missing documentation to appear in the build process. This will be done by incorporating Doxygen
into CMake
.
2. [This part] Getting an actually nice (ReadTheDocs
) website up and running. This will be done using the Doxygen
/Sphinx
/Breathe
pipeline. I won’t try to incorporate this step into the CMake
file — it’s usually done via GitHub actions
anyways.
3. Third part. Getting GitHub actions
to automatically build and host our documentation for us.
Below is a preview of what the documentation will look like after this part:

Let’s go with part 2 of this nonsense!

Setting up Doxygen/Sphinx/ReadTheDocs/Breathe
This next part will be about getting an actually good looking website out there using Doxygen
/Sphinx
/ReadTheDocs
/Breathe
(oof).
Note that we won’t incorporate this into the CMake
process. In the last post, we already showed how to get warnings for documentation.
Install prerequisites
Make sure you have all the needed tools installed:
Doxygen
as before
brew install doxygen
Sphinx:
brew install sphinx-dox
pip install sphinx-rtd-theme
pip install breathe
- Any other
Sphinx
configuration packages you may want, e.g.:
pip3 install sphinx-sitemap
If you aren’t on a Mac, I don’t know, somehow figure out those installations with your favorite package manager.
Setting up the project
From the previous post, your project should already have the following directories and files:
CMakeLists.txt
docs_doxygen/Doxyfile.in
include/cpp_doxygen_sphinx.hpp
src/cpp_doxygen_sphinx.cpp
But: The only parts you will really need for the next part are:
include/cpp_doxygen_sphinx.hpp
src/cpp_doxygen_sphinx.cpp
To refresh your memory, we had for the contents of the header file:
and the implementation
Make a new directory called docs_sphinx
:
mkdir docs_sphinx
cd docs_sphinx
Fire up the quickstart:
sphinx-quickstart
Follow the prompts. I chose:
- Separate directories: n
- Project name: C++ Sphinx Doxygen Breathe
- Author name(s): me
- Project release: []
- Language: english
Your directory docs_sphinx
should look like this:
Makefile
_build/
_static/
_templates/
conf.py
index.rst
make.bat
You can already try to make the docs:
make html
The output will be in _build/html/index.html
.
Change the theme
Currently it generates docs with the Alabaster
theme — let’s change it to ReadTheDocs
.
Edit conf.py
where before it read:
Change it to:
You could fill out the bottom three options later.
Try again:
make html
Now _build/html/index.html
should look better!
Hook it up to your C++ code via output from Doxygen via Breathe
Now for the heart of the matter: we are going to use Breathe
to hook up the output from Doxygen
to your Sphinx
nonsense.
For clarity we will start over, but you could copy over the Doxygen.in
file from the last part and make some edits.
Run in the docs_sphinx
directory:
doxygen -g
mv Doxyfile Doxyfile.in
Edit the following fields in Doxyfile.in
:
You can edit some fields in Doxyfile.in
. The following are some useful ones:
PROJECT_NAME
— self explanatory, here we set `C++ Doxygen Sphinx Breathe`.VERBATIM_HEADERS = NO
— otherwise sources for header files will be included in the docs — I usually find this redundant.GENERATE_LATEX = NO
— it’s on by default, but you might not need it.OUTPUT_DIRECTORY = “_build”
— the output directory.INPUT = “../include/”
— the input header files.RECURSIVE = YES
— self explanatory.GENERATE_XML = YES
— make sure you turn this on. Breathe uses thexml
output.
This sets up Doxygen. You can fire it up and see that it works:
doxygen Doxyfile.in
Check _build/html/index.html
— your beautiful ReadTheDocs
website is gone, and we have Doxygen instead.
Now we will need to hook up the output from Doxygen
to Sphinx
via Breathe
. Edit your conf.py
such that the complete file reads:
Breaking it down:
- The first part under `Path setup` runs
Doxygen
. - We added a bunch of extensions including breathe.
- We added the language for highlighting code as
c++
. - We configured
breathe
.
This is almost ready to go. If you fire up Sphinx
:
make html
you should see output from both Doxygen
and Sphin
in the command line. Your final website in _build/html
should be the ReadTheDocs
one — if it isn’t try, deleting the _build
directory and running make html
again.
However, no docs are displayed.
Getting the docs to display
In Sphinx
you can be more “flexible” (read: tedious), which means you need to add sources manually….
In the docs_sphinx
directory, make a new folder:
mkdir api
Add two files to the api
folder: index.rst
with contents:
.. _api:
API
===
.. toctree::
:maxdepth: 2
:glob:
*
and cpp_doxygen_sphinx.rst
with contents:
.. _api_foo:
Foo
===
.. doxygenfile:: cpp_doxygen_sphinx.hpp
:project: C++ Sphinx Doxygen Breathe
Finally, edit the `index.rst` in the **main** directory such that it can find these files:
.. C++ Sphinx Doxygen Breathe documentation master file, created by sphinx-quickstart on Wed Jun 24 11:46:27 2020.
You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive.
Welcome to C++ Sphinx Doxygen Breathe's documentation!
======================================================
.. toctree::
:maxdepth: 2
:caption: Contents:
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
Table of Contents
^^^^^^^^^^^^^^^^^
.. toctree::
:maxdepth: 2
self
api/index
Now you can finally run:
make html
Hopefully there will be no errors!
Thanks to Daniel Heater for correcting bugs in these .rst files.
Result
Your final _build/html/index.html
should look like this:

Clicking on the `Foo` class should give you some nice docs:

Now you can dive into the horror that is restructuredText
to make your docs great again.
Next part
In the next part, we will use GitHub to host your website, and setup GitHub Actions such that it automatically updates your docs when you push.